Publications

  • Judith Abécassis, Julie Josse and Bertrand Thirion (2022).
    Causal mediation analysis with one or multiple mediators: a comparative study.
    Technical report[paper][ analysis code]

  • Anne-Sophie Hamy, Judith Abecassis, Lauren Darrigues, Cecile Laurent, Francois Zaccarini, Benjamin Sadacca, Myriam Delomenie, Enora Laas, Odette a Mariani, Thanh Lam, Beatriz Grandal, Marick Lae, Ivan Bieche, Sophie Vacher, Jean-Yves Pierga, Etienne Brain, Celine Vallot, Judicael HOTTON, Wilfrid Richer, Joshua Waterfall, Fabien Reyal (2021).
    Evolution of synchronous bilateral breast cancers provide insights into interactions between host, tumor and immunity.
    medRxiv (under review) [paper]

  • Judith Abécassis, Fabien Reyal, Jean-Philippe Vert (2021).
    CloneSig: Joint inference of intra-tumor heterogeneity and signature deconvolution in tumor bulk sequencing data.
    Nature Communications, 10.1038/s41467-021-24992-y. [paper][ analysis code][package]

  • Vanille Simon, Lucie Laot, Enora Laas, Sonia Rozette, Julien Guerin, Thomas Balezeau, Marion Nicolas, Jean-Yves Pierga, Florence Coussy, Marick Laé, Diane De Croze, Beatriz Grandal, Judith Abecassis, Elise Dumas, Florence Lerebours, Fabien Reyal, Anne-Sophie Hamy (2020).
    No Impact of Smoking Status on Breast Cancer Tumor Infiltrating Lymphocytes, Response to Neoadjuvant Chemotherapy and Prognosis.
    Cancers. 12(10):2943.[paper]

  • Judith Abécassis, Anne-Sophie Hamy, Cécile Laurent, Benjamin Sadacca, Hélène Bonsang-Kitzis, Fabien Reyal, Jean-Philippe Vert (2019).
    Assessing reliability of intra-tumor heterogeneity estimates from single sample whole exome sequencing data.
    PloS one, 10.1371/journal.pone.0224143. [article][code]

  • Benjamin Sadacca, Anne-Sophie Hamy, Cécile Laurent, Pierre Gestraud, Hélène Bonsang-Kitzis, Alice Pinheiro, Judith Abecassis, Pierre Neuvial, Fabien Reyal (2017).
    New insight for pharmacogenomics studies from the transcriptional analysis of two large-scale cancer cell line panels.
    Scientific reports, 10.1038/s41598-017-14770-6. [article]

  • Anne-Sophie Hamy, Hélène Bonsang-Kitzis, Marick Lae, Matahi Moarii, Benjamin Sadacca, Alice Pinheiro, Marion Galliot, Judith Abecassis, Cecile Laurent, Fabien Reyal (2016).
    A Stromal Immune Module Correlated with the Response to Neoadjuvant Chemotherapy, Prognosis and Lymphocyte Infiltration in HER2-Positive Breast Carcinoma Is Inversely Correlated with Hormonal Pathways.
    PloS one, 10.1371/journal.pone.0167397. [article]

  • Camille Berthelot, Matthieu Muffato, Judith Abecassis, Hugues Roest Crollius (2015).
    The 3D Organization of Chromatin Explains Evolutionary Fragile Genomic Regions.
    Cell reports, 10.1016/j.celrep.2015.02.046. [article]


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